Combining mass spectrometry and machine learning models for predicting Klebsiella pneumoniae antimicrobial resistance: a multicenter experience from clinical isolates in Italy
Rocchi E, Nicitra E, Calvo M, Cento V, Peiretti L, Asif Z, Menchinelli G, Posteraro B, Sala C, Colosimo C, Cricca M, Sambri V, Sanguinetti M, Castellani G, Stefani S
@article{rocchi2026combining,
title={Combining mass spectrometry and machine learning models for predicting {Klebsiella pneumoniae} antimicrobial resistance: a multicenter experience from clinical isolates in Italy},
author={Rocchi, Ettore and Nicitra, Emanuele and Calvo, Maddalena and Cento, Valeria and Peiretti, Laura and Asif, Zian and Menchinelli, Giulia and Posteraro, Brunella and Sala, Claudia and Colosimo, Claudia and Cricca, Monica and Sambri, Vittorio and Sanguinetti, Maurizio and Castellani, Gastone and Stefani, Stefania},
journal={BMC Microbiology},
year={2026},
publisher={Springer},
doi={10.1186/s12866-025-04657-2}
}
2025npj Digital MedicineOpen Access
Artificial Intelligence model to predict resistances in Gram-negative bloodstream infections
Bonazzetti C, Rocchi E, Toschi A, Derus NR, Sala C, Pascale R, Rinaldi M, Campoli C, Pasquini ZAI, Tazza B, Amicucci A, Gatti M, Ambretti S, Viale P, Castellani G, Giannella M
@article{bonazzetti2025artificial,
title={Artificial Intelligence model to predict resistances in Gram-negative bloodstream infections},
author={Bonazzetti, Cecilia and Rocchi, Ettore and Toschi, Alice and Derus, Nicolas Riccardo and Sala, Claudia and Pascale, Renato and Rinaldi, Matteo and Campoli, Caterina and Pasquini, Zeno Adrien Igor and Tazza, Beatrice and Amicucci, Armando and Gatti, Milo and Ambretti, Simone and Viale, Pierluigi and Castellani, Gastone and Giannella, Maddalena},
journal={npj Digital Medicine},
volume={8},
number={1},
pages={319},
year={2025},
publisher={Nature Publishing Group},
doi={10.1038/s41746-025-01696-x}
}
2025Frontiers in Genome EditingOpen Access
CATS: a bioinformatic tool for automated Cas9 nucleases activity comparison in clinically relevant contexts
Rocchi E, Magnani F, Castellani G, Carusillo A, Tarozzi M
@article{rocchi2025cats,
title={CATS: a bioinformatic tool for automated Cas9 nucleases activity comparison in clinically relevant contexts},
author={Rocchi, Ettore and Magnani, Federico and Castellani, Gastone and Carusillo, Antonio and Tarozzi, Martina},
journal={Frontiers in Genome Editing},
volume={7},
pages={1571023},
year={2025},
publisher={Frontiers},
doi={10.3389/fgeed.2025.1571023}
}
2025EntropyOpen Access
Leveraging Neural ODEs for Population Pharmacokinetics of Dalbavancin in Sparse Clinical Data
Giacometti T, Rocchi E, Cojutti PG, Magnani F, Remondini D, Pea F, Castellani G
@article{giacometti2025leveraging,
title={Leveraging Neural ODEs for Population Pharmacokinetics of Dalbavancin in Sparse Clinical Data},
author={Giacometti, Tommaso and Rocchi, Ettore and Cojutti, Pier Giorgio and Magnani, Federico and Remondini, Daniel and Pea, Federico and Castellani, Gastone},
journal={Entropy},
volume={27},
number={6},
pages={602},
year={2025},
publisher={MDPI},
doi={10.3390/e27060602}
}
2025Frontiers in RadiologyOpen Access
Radiomic signatures from postprocedural MRI thalamotomy lesion can predict long-term clinical outcome in patients with tremor after MRgFUS: a pilot study
Innocenzi A, Peluso S, Bruno F, Balducci L, Rocchi E, Bellini M, Catalucci A, Sucapane P, Saporito G, Russo T, Castellani G, Pistoia F, Splendiani A
@article{innocenzi2025radiomic,
title={Radiomic signatures from postprocedural MRI thalamotomy lesion can predict long-term clinical outcome in patients with tremor after MRgFUS: a pilot study},
author={Innocenzi, Antonio and Peluso, Sara and Bruno, Federico and Balducci, Laura and Rocchi, Ettore and Bellini, Michela and Catalucci, Alessia and Sucapane, Patrizia and Saporito, Gennaro and Russo, Tommasina and Castellani, Gastone and Pistoia, Francesca and Splendiani, Alessandra},
journal={Frontiers in Radiology},
volume={5},
pages={1683274},
year={2025},
publisher={Frontiers},
doi={10.3389/fradi.2025.1683274}
}
2025Scientific ReportsOpen Access
Understanding the evolutionary dynamics of Monkeypox virus through less explored pathways
De Pascali AM, Ingletto L, Brandolini M, Rocchi E, Tarozzi M, Turba ME, Casadio R, Gentilini F, Gatti G, Dionisi L, Colosimo C, Guerra M, Zannoli S, Dirani G, Montanari MS, Marzucco A, Grumiro L, Rossini G, Lazzarotto T, Cricca M, Castellani G, Sambri V, Scagliarini A
@article{depascali2025understanding,
title={Understanding the evolutionary dynamics of Monkeypox virus through less explored pathways},
author={De Pascali, Alessandra Mistral and Ingletto, Ludovica and Brandolini, Martina and Rocchi, Ettore and Tarozzi, Martina and Turba, Maria Elena and Casadio, Rita and Gentilini, Fabio and Gatti, Giulia and Dionisi, Laura and Colosimo, Claudia and Guerra, Massimiliano and Zannoli, Silvia and Dirani, Giorgio and Montanari, Maria Sofia and Marzucco, Anna and Grumiro, Laura and Rossini, Giada and Lazzarotto, Tiziana and Cricca, Monica and Castellani, Gastone and Sambri, Vittorio and Scagliarini, Alessandra},
journal={Scientific Reports},
volume={15},
number={1},
pages={25849},
year={2025},
publisher={Nature Publishing Group},
doi={10.1038/s41598-025-11855-5}
}
2023VirusesOpen Access
Comparing Heterologous and Homologous COVID-19 Vaccination: A Longitudinal Study of Antibody Decay
Orlandi C, Stefanetti G, Barocci S, Buffi G, Diotallevi A, Rocchi E, Ceccarelli M, Peluso S, Vandini D, Carlotti E, Magnani M, Galluzzi L, Casabianca A
@article{orlandi2023comparing,
title={Comparing Heterologous and Homologous COVID-19 Vaccination: A Longitudinal Study of Antibody Decay},
author={Orlandi, Chiara and Stefanetti, Giuseppe and Barocci, Sara and Buffi, Giorgia and Diotallevi, Aurora and Rocchi, Ettore and Ceccarelli, Mauro and Peluso, Sara and Vandini, Davide and Carlotti, Elisa and Magnani, Mauro and Galluzzi, Luca and Casabianca, Anna},
journal={Viruses},
volume={15},
number={5},
pages={1162},
year={2023},
publisher={MDPI},
doi={10.3390/v15051162}
}
2022BioMedInformaticsOpen Access
A New Epidemic Model for the COVID-19 Pandemic: The θ-SI(R)D Model
@article{rocchi2022new,
title={A New Epidemic Model for the COVID-19 Pandemic: The $\theta$-SI(R)D Model},
author={Rocchi, Ettore and Peluso, Sara and Sisti, Davide and Carletti, Margherita},
journal={BioMedInformatics},
volume={2},
number={3},
pages={398--404},
year={2022},
publisher={MDPI},
doi={10.3390/biomedinformatics2030025}
}